From what I understand these homophobic events were the product of the director of Persona 3,4,5,Catherine
He's gone for Persona 6, so there is a chance that game won't be problematic as someone else will be in charge. Now, will that new person also be problematic, that remains to be seen, but I only hope they are not.
https://en.wikipedia.org/wiki/Katsura_Hashino
https://www.polygon.com/2017/5/4/15545254/persona-5-director-leaves-katsura-hashino
Though I see he's in charge of the newly announced, Metaphor: ReFantazio, so we are not entirely free of his influence.