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Varying air pressure is certainly a concern, but repeating the experiment, as you said, would help to reduce the error, as would being as close to sea level as possible. Interestingly, if you have your meter measure you could use that to measure atmospheric pressure by seeing how far you could raise water in a column by suction. At standard atmospheric pressure you should be able to lift fresh water 10.3m.
Gravity is altogether too unreliable and should be abolished. Failing that, You could measure the local gravity by measuring how far a rock falls in a fixed time, say one second, and calculating back from that. If the rock is heavy enough we can ignore air resistance as the effect will be smaller than our measurement error.